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#               National Center for Biotechnology Information
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if ( NOT WIN32 )

ToolsRequired(fasterq-dump sam-factory bam-load kar)

    add_test( NAME Test_FasterqDump_Help
        COMMAND ${BINDIR}/fasterq-dump -h
        WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )

    add_test( NAME Test_FasterqDump_NotZeroWithoutParameters
        COMMAND ${BINDIR}/fasterq-dump
        WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )
    set_tests_properties(Test_FasterqDump_NotZeroWithoutParameters PROPERTIES WILL_FAIL TRUE)

    add_test( NAME Test_FasterDump_Fasta_unsorted_flat_tbl_read_id
        COMMAND
            bash test_for_read_id_flat.sh ${DIRTOTEST}
        WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )

    add_test( NAME Test_FasterDump_Fasta_unsorted_cSRA_read_id
        COMMAND
            ${CMAKE_COMMAND} -E env VDB_CONFIG=${CMAKE_CURRENT_SOURCE_DIR}
            bash -c "echo 'vdb/schema/paths = \"${VDB_INCDIR}\"' > tmp.kfg; ./test_for_read_id_cSRA.sh ${DIRTOTEST}"
        WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )

    if( RUN_SANITIZER_TESTS )
        add_test( NAME Test_FasterqDump_Help-asan
            COMMAND ${BINDIR}/fasterq-dump-asan -h
            WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )

        add_test( NAME Test_FasterqDump_NotZeroWithoutParameters-asan
            COMMAND ${BINDIR}/fasterq-dump-asan
            WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )
        set_tests_properties(Test_FasterqDump_NotZeroWithoutParameters-asan PROPERTIES WILL_FAIL TRUE)

        add_test( NAME Test_FasterqDump_Help-tsan
            COMMAND ${BINDIR}/fasterq-dump-tsan -h
            WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )

        add_test( NAME Test_FasterqDump_NotZeroWithoutParameters-tsan
            COMMAND ${BINDIR}/fasterq-dump-tsan
            WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )
        set_tests_properties(Test_FasterqDump_NotZeroWithoutParameters-tsan PROPERTIES WILL_FAIL TRUE)
    endif()

    add_test( NAME Test_Tiny_cSRA
        COMMAND
            ${CMAKE_COMMAND} -E env VDB_CONFIG=${CMAKE_CURRENT_SOURCE_DIR}
            bash -c "echo 'vdb/schema/paths = \"${VDB_INCDIR}\"' > tmp.kfg; ./tiny_csra.sh ${DIRTOTEST} ${BINDIR}"
        WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )

else()
#TODO: make run on Windows
endif()
