43df5b22b8e6e74650092260e25fccfc *DESCRIPTION
8fcfa16683aeaeed06b70f7b698565d1 *NAMESPACE
54e2a28f563aef5f3c407725acfcfde1 *R/RcppExports.R
4d37f548893c52bcb32eaaa096e830ef *R/data.R
3c8e64669b89cf7daeb5b98a60de8f75 *R/findGroves.R
aabb929e747e4f4a68ee9ba625a81982 *R/medTree.R
69380b5a723020b21bec34e093377f66 *R/metrics.R
51f8d6b9eec71a25358e2f076fc18c52 *R/plotGroves.R
a83358b9ee1ffcdabd283f795c6b1b3d *R/plotTreeDiff.R
6b4e49a4df1759cc3a0d2ebaafa9176a *R/servers.R
626965bc80ff03b1e486ca1744099951 *R/transmissionTrees.R
9341ab293bcb592fe7736344ee59be91 *R/treescape.R
8cabbef95f7f400034136ee90c196abc *README.md
059baabca5cce2599e22c2bc3b29ca4c *build/vignette.rds
2f82967b31cf0355fca77cf057da0b00 *data/DengueBEASTMCC.RData
1afe5da1601d5ae111806c08e57fec0c *data/DengueSeqs.RData
f128fb06ac44efd32fb04ecc06896bd2 *data/DengueTrees.RData
e49f82b9d2e4e04959fc1609e3242de7 *data/fluTrees.RData
48df74b1807cc03a99ea9f4d16e0a8e9 *data/woodmiceTrees.RData
1ad1f0f759efacd0a22b67df904efd90 *inst/doc/DengueVignette.R
12a7e58b10c437c3363589869046b528 *inst/doc/DengueVignette.Rmd
46b01b33f0efe889c13c64350e5f4b98 *inst/doc/DengueVignette.html
0126679c7bdff47bb9fbc6933864aa3e *inst/doc/TransmissionTreesVignette.R
2650238faf6fd502248791d4cfe397b9 *inst/doc/TransmissionTreesVignette.Rmd
192b78df8bf1a68af59bc9b78c900e98 *inst/doc/TransmissionTreesVignette.html
342253184e703d9ce1d6bccb21747cfb *inst/doc/treescape.R
20155e50d95a71d912f0722316537698 *inst/doc/treescape.Rmd
3896389c18c61b3a7102fadaa43ef548 *inst/doc/treescape.html
cfdcf449f4c9c04df684fd4c7ca70fad *inst/shiny/server.R
b3b4fa15c69c6b158aecffc2f2e3831b *inst/shiny/ui.R
6c4711607de1791415c5b50511e84ad3 *inst/shiny/www/bootstrap.simplex.css
dc516afa494d9430a94c9fb23fc6aa97 *inst/shiny/www/html/help.html
d8684ae68cfdcc9049f1ff417ce3c3eb *inst/shiny/www/img/line.png
10c78105a7ca827999c25885a737b878 *inst/shiny/www/img/logo.png
96abc4b41da8cafa6f565bf5604b460c *inst/shiny/www/styles.css
409088a2b90a026ebeba634cc82e75fd *man/DengueBEASTMCC.Rd
931ba022d2059fc8d0a0003010bc1f4b *man/DengueSeqs.Rd
e5f6a17a29bada952d61ede814a6104b *man/DengueTrees.Rd
a3b8a4e6c836b96a335149c8030b89b3 *man/findGroves.Rd
45b94ecff7589c778c554a39583d13f7 *man/findMRCIs.Rd
f25b26f81048e729cd7e9cc4595cf850 *man/fluTrees.Rd
1f681449e16029ca6410e2ebe3ed6845 *man/linearMrca.Rd
0c29068380e72978ac6e09e9883970c2 *man/medTree.Rd
1dbb7c0af7cd94dcd00e65714a7f6b33 *man/multiDist.Rd
724dddefc741e30304d901ed3c670e7f *man/plotGroves.Rd
50ab728007dc454361c42a86601a45e1 *man/plotGrovesD3.Rd
d9cca38507f046ef0be869b175f238e1 *man/plotTreeDiff.Rd
8f1acac7a754316a4d8784709b2ef95c *man/refTreeDist.Rd
60ef3ff564e5b3768015a8c09559b6a3 *man/tipDiff.Rd
48f42434b86415fb8d649f95984c65d1 *man/treeDist.Rd
22a2440ea90d7501e4dbcd7cb9c06827 *man/treeVec.Rd
a4e812a441994aa1a0fd9659d459ad9f *man/treescape.Rd
8b864675beb123bbe43b61bb366c16d3 *man/treescapeServer.Rd
f63fd231b03b47110f2cce6a5408d479 *man/wiwMedTree.Rd
bcf26d5f478bddf7a28d0c44675cf1bd *man/wiwTreeDist.Rd
40f5a4dda01e69bbe9391daf4e8fe9f8 *man/woodmiceTrees.Rd
9c74c81eeaf5d8af22cd33dab4daffcc *src/CPP_update_combinations.cpp
af632a0cc04bac5ddea01798fb414673 *src/RcppExports.cpp
c58d747ecad6566578e2cc8c7fc6f57f *tests/testthat.R
80eac9cb3bc1bdfd18084161e59ee734 *tests/testthat/testbasics.R
12a7e58b10c437c3363589869046b528 *vignettes/DengueVignette.Rmd
98279eb697d3fae1afd0e6717a8154ec *vignettes/DengueVignette.md
2650238faf6fd502248791d4cfe397b9 *vignettes/TransmissionTreesVignette.Rmd
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964108c7a57b5ae5266ac53274bafbc5 *vignettes/figs/BEASTtree_diffs-2.png
abe7af2466cf520464dc904dd87cbfa6 *vignettes/figs/compare_BEAST_to_other_trees-1.png
105765a63b9d994d264436ef48594d99 *vignettes/figs/compare_BEAST_to_other_trees-2.png
a6d84b57f3b4f419d5087b05349ff8ef *vignettes/figs/compare_BEAST_to_other_trees-3.png
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342ffa7032b079d2f99325c03e4b0359 *vignettes/figs/scree_plot-1.png
85c973c1060fabde2d9e395f8081ca46 *vignettes/figs/see_ML_boots-1.png
31f2b3ae0bda7057c874b3980ece9ac4 *vignettes/figs/see_NJ_boots-1.png
cd0051f975254687dd735e2c9b13749d *vignettes/figs/trees2_and_3-1.png
dd701c13f8451f952bfaea1491cbd955 *vignettes/figs/trees2_and_3-2.png
dece84f823670ff0e7257cc643bf068b *vignettes/figs/treescape3d.png
3957a3c2207cd065f1d95cc704ebaa7d *vignettes/figs/treescapeDensiTree.png
32257dc64bf2670d28770a4679f063a7 *vignettes/figs/treescapeTree.png
8b31dc89bb6505f315633cf746059045 *vignettes/figs/view_ML-1.png
17da5158b60832defe3ead8e10999f6e *vignettes/figs/wiwMedTreePlot-1.png
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2dc4b2ff88519dca3e0f40cf640bf2ab *vignettes/figs/woodmice-tip-emphasis_readme-1.png
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5b107de519c1e028e932ff08f702f968 *vignettes/figs/woodmiceCluster1_readme-1.png
2df84ea0fd09a98b33454df3332df3a5 *vignettes/figs/woodmiceMedian-1.png
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a6c38c4de06569b8837882efc8f1d050 *vignettes/figs/woodmice_plotTreeDiff_readme-2.png
20155e50d95a71d912f0722316537698 *vignettes/treescape.Rmd
